miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|304527747|gb|HO327149.1|HO327149 ACGAACAAATAGGTCCGAGCCACCTGAAAGAGCTGGTAGTCGCGTTTCAGACACACGAGATTTGACGATGGGTCAACTAA
ACCCTCTTTTGCGGCATCTACTTCCCTACAATTTCTGGTTTACATCAAAAAGCAATCGAGACTTTCAAAATGGTAGGAGA
TTCTCTACCAATACCCACCAATCACCTAATTTGTCCAAAAGACCCACGGTGAAGGAACGCAGTTAATTTAGCAGCAAGTG
CATAGTAGAGAACTGGAGGTACAGGAGTTGGCACCAAGTTCGCTACGTTACTCGGACTCTCTTGTGATTTGAACTCGCAG
CATCCCTCACCCCCTTGCCTGTCACTGCATATGGAGCTGAAGCTACTGGAAGTGAAGGAGATTTGTCCAGGTATGCATAC
CGATCATTCCCATTCCAGTACAGAATCAGTCGATTTGTGCACGAGTGGGACCAGCTGTCACCTAGAGCAAGAGTCAATTG
AAATGATCCTTCTGTAAATTTAGTAGTGACTTGGTTCAACAAGACAACCTGCTCAACAAAACAAGATGATAAGTCTGATA
GCCTCATTAAAATCCTTCCTCCCTCCGCTCCAAATAATGGGGTTGTATTAGCTTTGTCCAAGTCAAACATGTCTAAATTT
GACAAAGTTTATAGAAAATATATTAACACCTAAAATATCAAATATAATGCCACCATGAAAATATATTTCATGGGTCTATC
TACTGAAACTAGTTTGATATTGAAGATATATATGTATTTTTCTATAAACTTGGTCAAAGCTAAAGAAGTTTGACTT




Most similar to sp|Q8GXF0|RA51C_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3
           OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2
          Length = 363

 Score =  130 bits (327), Expect = 1e-29
 Identities = 63/93 (67%), Positives = 79/93 (84%)
 Frame = -2

Query: 567 MRLSDLSSCFVEQVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYWNGNDRYAYL 388
           ++   L+  F   VVLLNQVTTKF+EGSFQL LALGDSWSHSCTNR+ILYWNG++RYAY+
Sbjct: 271 LKFMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDSWSHSCTNRVILYWNGDERYAYI 330

Query: 387 DKSPSLPVASAPYAVTGKGVRDAASSNHKRVRV 289
           DKSPSLP ASA Y VT +G+R+++SS+ KRV++
Sbjct: 331 DKSPSLPSASASYTVTSRGLRNSSSSS-KRVKM 362